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BioSpec - Research project
Quantitative analysis of biomarkers by spectrometry
Post-doctoral fellow: Arthur GAUTHERON
ABSTRACT
Spectrophotometric analysis has many advantages for in vivo characterization of human biological tissues and classification of healthy or pathological tissues: it is fast and contactless. The search for spectral patterns allows for example to detect the presence of biological components, chromophores or fluorophores, characteristic of some tumors. The challenge of the project is to be able not only to detect but also to quantify these components, i.e. to estimate their concentration in a reliable way, in order for example to help the surgeon to decide the perimeter of the tumor area to be resected. The envisaged methodology includes a rigorous photometric analysis of the measurement system and an optical model for light scattering and fluorescence in the various layers of tissues, which allow, in an inverse approach, to deduce the concentrations of components of interest from the spectral measurements. The difficulty of this approach is mainly due to the translucency of biological materials (light trajectories are more complex to describe than for more opaque materials), and to the constraints related to in vivo measurements (reflection measurements are possible, but not transmission measurements, which limits the data available for evaluating the parameters of the model). Applications in dermatology (melanoma and other cancers), neurosurgery (gliomas) and organ transplantation (liver, kidney) are targeted.
PUBLICATIONS
- Vincent Duveiller, Arthur Gautheron, Anthony Cazier, Lionel Simonot, Raphaël Clerc, Jean-Pierre Salomon, Mathieu Hebert, "Estimation of the fluorescence emission spectrum of dental composite resin samples of varying thickness" in Electronic Imaging, 2023, pp 190-1 - 190-7
https://doi.org/10.2352/EI.2023.35.15.COLOR-190
CONFERENCES
- Arthur Gautheron, Michaël Sdika, Jacques Guyotat, Thiébaud Picart, Laure Alston, et al.. Experimental decorrelation requirement for robust estimation of fluorophores using multiple-wavelength excitation fluorescence spectroscopy. SPIE; SPIE, pp.87, 2023, ⟨10.1117/12.2670879⟩.
⟨hal-04187600⟩ - Vincent Duveiller, Emmanuel Kim, Marie Locquet, Arthur Gautheron, Raphael Clerc, et al.. Predictions of the reflectance factor of translucent layered dental resin composites using two-flux models: assessing the importance of the interface reflectance parameter. Colour and Visual Computing Symposium 2022, Sep 2022, Gjøvik, Norway.
⟨hal-03792814⟩
About the BioSpec project
RESEARCH AXIS
KEYWORDS
Light scattering, fluorescence, non-invasive measurement, spectroscopy, classification of human tissues, cancer
DURATION - STATUS
01/01/2023 – 31/06/2024 - Ongoing
PhD STUDENT
Arthur GAUTHERON (LabHC)
PROJECT COORDINATORS
Mathieu HÉBERT (LabHC)
Raphaël CLERC (LabHC)
COORDINATING LABORATORY
Hubert Curien Laboratory (LabHC)
PARTNER LABORATORIES - OTHER PARTNERS
CREATIS Lab
SAINBIOSE Lab
LTDS Lab
PARTNER RESEARCHERS
Jean-Luc PERROT (SAINBIOSE/LTDS)
Bruno MONTCEL (CREATIS)
KEYWORDS
Light scattering, fluorescence, non-invasive measurement, spectroscopy, classification of human tissues, cancer
DURATION - STATUS
01/01/2023 – 31/06/2024 - Ongoing
PhD STUDENT
Arthur GAUTHERON (LabHC)
PROJECT COORDINATORS
Mathieu HÉBERT (LabHC)
Raphaël CLERC (LabHC)
COORDINATING LABORATORY
Hubert Curien Laboratory (LabHC)
PARTNER LABORATORIES - OTHER PARTNERS
CREATIS Lab
SAINBIOSE Lab
LTDS Lab
PARTNER RESEARCHERS
Jean-Luc PERROT (SAINBIOSE/LTDS)
Bruno MONTCEL (CREATIS)